The MAGMA pipeline for comprehensive genomic analyses of clinical Mycobacterium tuberculosis samples
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PLoS computational biology - ISSN 1553-734X-19:11 (2023) p. 1-24
TBProfiler for automated calling of the association with drug resistance of variants in Mycobacterium tuberculosis
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PLoS ONE - ISSN 1932-6203-17:12 (2022) p. 1-15
Sequencing Mycobacteria and Algorithm-determined Resistant Tuberculosis Treatment (SMARTT) : a study protocol for a phase IV pragmatic randomized controlled patient management strategy trial
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Trials - ISSN 1745-6215-23:1 (2022) p. 1-15
Variants in bedaquiline-candidate-resistance genes : prevalence in bedaquiline-naive patients, effect on MIC, and association with Mycobacterium tuberculosis lineage
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Antimicrobial agents and chemotherapy - ISSN 0066-4804-66:7 (2022) p. 1-12
Transmission, distribution and drug resistance-conferring mutations of extensively drug-resistant tuberculosis in the Western Cape Province, South Africa
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Microbial Genomics - ISSN 2057-5858-8:4 (2022) p. 1-13