Wout Bittremieux TT. asst. research professor

Publications Wout Bittremieux

AI proteomics : from protein identification to virtual cells

Source
Nature methods - ISSN 1548-7091- (2026) p.
Author(s)
    Yingying Sun, Jun A, Zhiwei Liu, Rui Sun, Liujia Qian, Samuel H. Payne, Wout Bittremieux, Markus Ralser, Chen Li, Yi Chen, Zhen Dong, Yasset Perez-Riverol, Asif Khan, Chris Sander, Ruedi Aebersold, Juan Antonio Vizcaíno, Jonathan R. Krieger, Jianhua Yao, Wen Han, Linfeng Zhang, Yunping Zhu, Yue Xuan, Benjamin Boyang Sun, Liang Qiao, Henning Hermjakob, Haixu Tang, Huanhuan Gao, Yamin Deng, Qing Zhong, Cheng Chang, Nuno Bandeira, Ming Li, Weinan E, Siqi Sun, Yuedong Yang, Gilbert S. Omenn, Yue Zhang, Ping Xu, Yan Fu, Xiaowen Liu, Christopher M. Overall, Yu Wang, Eric W. Deutsch, Luonan Chen, Jürgen Cox, Vadim Demichev, Fuchu He, Jiaxing Huang, Huilin Jin, Tiannan Guo

Bridging complexity and accessibility in metabolomics with MetaboApps

Source
Nature methods - ISSN 1548-7091-23:8 (2026) p. 1475-1477
Author(s)
    Helena Mannochio-Russo, Wilhan D. Goncalves Nunes, Haoqi Nina Zhao, Kine Eide Kvitne, Shipei Xing, Harsha Gouda, Julius Agongo, Ipsita Mohanty, Vincent Charron-Lamoureux, Prajit Rajkumar, Abzer K. Pakkir Shah, Axel Walter, Rithi Krishnaraj, Yasin El Abiead, Patrick C. Ferreira, Simone Zuffa, Abubaker Patan, Andres Mauricio Caraballo-Rodriguez, Wout Bittremieux, Daniel Petras, Mingxun Wang, Pieter C. Dorrestein

MetaboT : an LLM-based multi-agent framework for interactive analysis of mass spectrometry metabolomics knowledge graphs

Source
Journal of Cheminformatics - ISSN 1758-2946- (2026) p.
Author(s)
    Madina Bekbergenova, Lucas Pradi, Benjamin Navet, Emma Tysinger, Franck Michel, Matthieu Feraud, Yousouf Taghzouti, Yan Zhou Chen, Olivier Kirchhoffer, Florence Mehl, Martin Legrand, Tao Jiang, Marco Pagni, Soha Hassoun, Jean-Luc Wolfender, Wout Bittremieux, Fabien Gandon, Louis-Félix Nothias

Instrument–software synergy in proteomics : systematic evaluation across mass spectrometry platforms, search engines, and rescoring methods

Source
Journal of proteome research - ISSN 1535-3893- (2026) p. 1-11
Author(s)
    Sander Heyndrickx, Robbin Bouwmeester, Arthur Declerq, Robbe Devreese, Magnus Palmblad, Wout Bittremieux, Tess A.V. Afanasyeva, Joel Lapin, Arzu Tugce Guler, Pierre-Olivier Schmit, Christine Carapito, Lennart Martens, Ralf Gabriels

The 2025 Westlake Autumn Symposium for Al Proteomics and Virtual Cell

Source
Genomics, Proteomics and Bioinformatics - ISSN 1672-0229
Author(s)
    Rui Sun, Ruedi Aebersold, Qi Xiao, Matthias Mann, Yan Zhou, Albert J.R. Heck, Yingrui Wang, Uwe Völker, Xue Cai, Charles Boone, Zizhuo Zhou, Ming Li, Zhen Dong, Brenda Andrews, Shuaiyao Wang, Joseph Schacherer, Connie Jimenez, Bernd Wollscheid, Liang Yue, Ben C Collins, Heng Jiang, Dong Wang, Liujia Qian, Jia-Xing Yue, Yingying Sun, Edouard Nice, Xiaofan Zhang, Yasset Perez-Riverol, A Jun, Chris Sander, Henning Hermjakob, Wout Bittremieux, Wilson Goh Wen Bin, Ge Gao, Peijie Zhou, Siqi Sun, Han Wen, Ziyan Xu, Tiannan Guo