pmultiqc : an open-source, lightweight, and metadata-oriented QC reporting library for MS proteomics

Source
Molecular and cellular proteomics - ISSN 1535-9476-25:6 (2026) p. 1-11
Author(s)
    Qi-Xuan Yue, Chengxin Dai, Selvakumar Kamatchinathan, Chakradhar Bandla, Henry Webel, Asier Larrea, Wout Bittremieux, Julian Uszkoreit, Tom David Müller, Jinqiu Xiao, Juergen Cox, Fengchao Yu, Philip Ewels, Vadim Demichev, Oliver Kohlbacher, Timo Sachsenberg, Chris Bielow, Mingze Bai, Yasset Perez-Riverol

Scalable incremental clustering for tandem mass spectra in untargeted metabolomics

Source
Journal of proteome research - ISSN 1535-3893-25:3 (2026) p. 1626-1635
Author(s)
    Xianghu Wang, Deepa D. Archarya, Christopher J. Brown, Ken Clevenger, Jie Hu, Ashley Kretsch, Carla Menegatti, Quanbo Xiong, Wout Bittremieux, Mingxun Wang

Improved open modification searching via unified spectral search with predicted libraries and enhanced vector representations in ANN-SoLo

Source
Journal of proteome research - ISSN 1535-3893-25:3 (2026) p. 1781-1787
Author(s)