Wout Bittremieux TT. asst. research professor

Publications Wout Bittremieux

MetaboT : an LLM-based multi-agent framework for interactive analysis of mass spectrometry metabolomics knowledge graphs

Source
Journal of Cheminformatics - ISSN 1758-2946- (2026) p.
Author(s)
    Madina Bekbergenova, Lucas Pradi, Benjamin Navet, Emma Tysinger, Franck Michel, Matthieu Feraud, Yousouf Taghzouti, Yan Zhou Chen, Olivier Kirchhoffer, Florence Mehl, Martin Legrand, Tao Jiang, Marco Pagni, Soha Hassoun, Jean-Luc Wolfender, Wout Bittremieux, Fabien Gandon, Louis-Félix Nothias

Instrument–software synergy in proteomics : systematic evaluation across mass spectrometry platforms, search engines, and rescoring methods

Source
Journal of proteome research - ISSN 1535-3893- (2026) p. 1-11
Author(s)
    Sander Heyndrickx, Robbin Bouwmeester, Arthur Declerq, Robbe Devreese, Magnus Palmblad, Wout Bittremieux, Tess A.V. Afanasyeva, Joel Lapin, Arzu Tugce Guler, Pierre-Olivier Schmit, Christine Carapito, Lennart Martens, Ralf Gabriels

Community-driven advances in computational mass spectrometry : the perspective of EuBIC-MS members

Source
Journal of proteomics - ISSN 1874-3919-331 (2026) p.
Author(s)
    Dirk Winkelhardt, Julia P. Schessner, Sven Berres, Alireza Nameni, Armin Soleymaniniya, Ayla Schröder, Caroline Jachmann, Douwe Schulte, Georg Wallmann, Henry Webel, Johannes Rainer, Katerina Nastou, Laurent Gatto, Magnus Palmblad, Maike Weber, Omar Shouman, Pavel Sinitcyn, Ralf Gabriels, Robbe Devreese, Tim Van Den Bossche, Tine Claeys, Wout Bittremieux, Julian Uszkoreit

The 2025 Westlake Autumn Symposium for Al Proteomics and Virtual Cell

Source
Genomics, Proteomics and Bioinformatics - ISSN 1672-0229
Author(s)
    Rui Sun, Ruedi Aebersold, Qi Xiao, Matthias Mann, Yan Zhou, Albert J.R. Heck, Yingrui Wang, Uwe Völker, Xue Cai, Charles Boone, Zizhuo Zhou, Ming Li, Zhen Dong, Brenda Andrews, Shuaiyao Wang, Joseph Schacherer, Connie Jimenez, Bernd Wollscheid, Liang Yue, Ben C Collins, Heng Jiang, Dong Wang, Liujia Qian, Jia-Xing Yue, Yingying Sun, Edouard Nice, Xiaofan Zhang, Yasset Perez-Riverol, A Jun, Chris Sander, Henning Hermjakob, Wout Bittremieux, Wilson Goh Wen Bin, Ge Gao, Peijie Zhou, Siqi Sun, Han Wen, Ziyan Xu, Tiannan Guo

pmultiqc : an open-source, lightweight, and metadata-oriented QC reporting library for MS proteomics

Source
Molecular and cellular proteomics - ISSN 1535-9476-25:6 (2026) p.
Author(s)
    Qi-Xuan Yue, Chengxin Dai, Selvakumar Kamatchinathan, Chakradhar Bandla, Henry Webel, Asier Larrea, Wout Bittremieux, Julian Uszkoreit, Tom David Müller, Jinqiu Xiao, Juergen Cox, Fengchao Yu, Philip Ewels, Vadim Demichev, Oliver Kohlbacher, Timo Sachsenberg, Chris Bielow, Mingze Bai, Yasset Perez-Riverol