Wout Bittremieux TT. asst. research professor

Publications Wout Bittremieux

A universal language for finding mass spectrometry data patterns

Source
Nature methods - ISSN 1548-7091-22:6 (2025) p. 1247-1254
Author(s)
    Tito Damiani, Alan K. Jarmusch, Allegra T. Aron, Daniel Petras, Vanessa V. Phelan, Haoqi Nina Zhao, Wout Bittremieux, Deepa D. Acharya, Mohammed M.A. Ahmed, Anelize Bauermeister, Matthew J. Bertin, Paul D. Boudreau, Ricardo M. Borges, Benjamin P. Bowen, Christopher J. Brown, Fernanda O. Chagas, Kenneth D. Clevenger, Mario S.P. Correia, William J. Crandall, Max Crüsemann, Eoin Fahy, Oliver Fiehn, Neha Garg, William H. Gerwick, Jeffrey R. Gilbert, Daniel Globisch, Paulo Wender P. Gomes, Steffen Heuckeroth, C. Andrew James, Scott A. Jarmusch, Sarvar A. Kakhkhorov, Kyo Bin Kang, Nikolas Kessler, Roland D. Kersten, Hyunwoo Kim, Riley D. Kirk, Oliver Kohlbacher, Eftychia E. Kontou, Ken Liu, Itzel Lizama-Chamu, Gordon T. Luu, Tal Luzzatto Knaan, Helena Mannochio-Russo, Michael T. Marty, Yuki Matsuzawa, Andrew C. McAvoy, Laura-Isobel McCall, Osama G. Mohamed, Omri Nahor, Mingxun Wang

Improved open modification searching via unified spectral search with predicted libraries and enhanced vector representations in ANN-SoLo

Source
Zenodo, 2025,
Author(s)

Self-supervised learning from small-molecule mass spectrometry data

Source
Nature biotechnology - ISSN 1087-0156- (2025) p.
Author(s)

SpectriPy : enhancing cross-language mass spectrometry data analysis with R and Python

Source
Journal of open source software - ISSN 2475-9066-10:109 (2025) p. 1-5
Author(s)
    Marilyn De Graeve, Wout Bittremieux, Thomas Naake, Carolin Huber, Matthias Anagho-Mattanovich, Nils Hoffmann, Pierre Marchal, Victor Chrone, Philippine Louail, Helge Hecht, Michael Witting, Johannes Rainer

Open-source and FAIR research software for proteomics

Source
Journal of proteome research - ISSN 1535-3893-24:5 (2025) p. 2222-2234
Author(s)
    Yasset Perez-Riverol, Wout Bittremieux, William S. Noble, Lennart Martens, Aivett Bilbao, Michael R. Lazear, Bjorn Gruening, Daniel S. Katz, Michael J. MacCoss, Chengxin Dai, Jimmy K. Eng, Robbin Bouwmeester, Michael R. Shortreed, Enrique Audain, Timo Sachsenberg, Jeroen Van Goey, Georg Wallmann, Bo Wen, Lukas Kall, William E. Fondrie