Publications

Note: only publications that have been accepted are shown.


Related to MHC data modeling

P. Meysman, N. De Neuter, E. Bartholomeus, G. Elias, J. Van den Bergh, M.P. Emonds, G.W. Haasnoot, S. Heynderickx, J. Wens, N.R. Michels, J. Lambert, E. Lion, F.H.J. Claas, H. Goossens, E. Smits, P. Van Damme, V. Van Tendeloo, P. Beutels, A. Suls, G. Mortier, K. Laukens* and B. Ogunjimi*. *equal contribution. Increased herpes zoster risk associated with poor HLA-A Immediate Early 62 Protein (IE62) affinity. Immunogenetics, 2018, 70(6):363-372.

P. Meysman, D. Federov, V. Van Tendeloo, B. Ogunjimi and K. Laukens. Immunological evasion of immediate-early varicella zoster virus proteins. Immunogenetics, 2016, Jul;68(6-7):483-6.

P. Meysman, B. Ogunjimi, S. Naulaerts, P. Beutels, V. Van Tendeloo and K. Laukens. Varicella-zoster virus-derived MHC class I-restricted peptide affinity is a determining factor for HLA risk profile to develop PHN. Journal of Virology, 2015, 15;89(2):962-9. 

 

Related to TCR data modeling

P. Moris, J. De Pauw, A. Postovskaya, S. Gielis, N. De Neuter, W. Bittremieux, B. Ogunjimi, K. Laukens and P. Meysman. Current challenges for unseen-epitope TCR interaction prediction and a new perspective derived from image classification. Briefings in Bioinformatics, accepted.

S. Gielis, P. Moris, W. Bittremieux, N. De Neuter, B. Ogunjimi, K. Laukens and P. Meysman. Identification of Epitope-Specific T Cells in T-Cell Receptor Repertoires. Methods Mol Biol, 2020; 2120:183-195.

S. Gielis, P. Moris, W. Bittremieux, N. De Neuter, B. Ogunjimi, K. Laukens and P. Meysman. Detection of Enriched T Cell Epitope Specificity in Full T Cell Receptor Sequence Repertoires. Frontiers in Immunology, 2019, 10:2820.

P. Meysman, N. De Neuter, S. Gielis, D. Bui Thi, B. Ogunjimi and K. Laukens. On the viability of unsupervised T-cell receptor sequence clustering for epitope preference. Bioinformatics, 2019, May 1;35(9):1461-1468.

N. De Neuter, E. Bartholomeus, G. Elias, N. Keersmaekers, A. Suls, H. Jansens, E. Smits, N. Hens, P. Beutels, P. Van Damme, G. Mortier, V. Van Tendeloo, K. Laukens, P. Meysman* and B. Ogunjimi*. Memory CD4+ T cell receptor repertoire data mining as a tool for identifying cytomegalovirus serostatus. Genes and Immunity, 2019, 20(3):255-260. *equal contribution

N. De Neuter, C. Beirnaert, W. Bittremieux, B. Cuypers, A. Ligata, P. Moris, A. Suls, V. Van Tendeloo, B. Ogunjimi, K. Laukens* and P. Meysman*. *equal contribution. On the feasibility of mining CD8+ T-cell receptor patterns underlying immunogenic peptide recognition. Immunogenetics, 2018, 70(3):159-168.

B. Ogunjimi, J. Van den Bergh*, P. Meysman*, S. Heynderickx , K. Bergs , H. Jansens , E. Leuridan , A. Vorsters , H. Goossens , K. Laukens , N. Cools , V. Van Tendeloo , N. Hens , P. Van Damme , E. Smits**  and P. Beutels**. *equal contribution, **equal contribution. Multidisciplinary study of the secondary immune response in grandparents re-exposed to chickenpox. Scientific Reports, 2017, Apr 24;7(1):1077.

 

Related to whole blood RNA sequencing

E. Bartholomeus, N. De Neuter, A. Suls, G. Elias, S. van der Heijden, N. Keersmaekers, H. Jansens, V. Van Tendeloo, P. Beutels, K. Laukens, B. Ogunjimi, G. Mortier, P. Meysman & P. Van Damme. Transcriptomic Profiling of Different Responder Types in Adults After a Priorix® Vaccination. Vaccine, 2020 Apr 3;38(16):3218-3226.

E. Bartholomeus, N. De Neuter, A. Lemay, L. Pattyn, T. Tuerlinckx, D. Weynants, K. Van Lede, G. Van Berlaer, D; Bulckaert, T. Boiy, A. Vander Auwera, M. Raes, D. Van der Linden, H. Verhelst, S. Van Steijn, T. Jonckheer, J. Dehoorne, R. Joos, H. Jansens, A. Suls, P. Van Damme, K. Laukens, G. Mortier, P. Meysman and B. Ogunjimi. Diagnosing Enterovirus Meningitis via Blood Transcriptomics: An Alternative for Lumbar Puncture? Journal of Translational Medicine, 2019, 23;17(1):282.

E. Bartholomeus, N. De Neuter, P. Meysman, A. Suls, N. Keersmaekers, G. Elias, H. Jansens, N. Hens, E. Smits, V. Van Tendeloo, P. Beutels, P. Van Damme, B. Ogunjimi*, K. Laukens* and G. Mortier*. Transcriptome profiling in blood before and after hepatitis B vaccination shows significant differences in gene expression between responders and non-responders. Vaccine, 2018, 36(42):6282-6289. *equal contribution

 

Related to other applications

N. Keersmaekers, B. Ogunjimi, P. Van Damme, P. Beutels and N. Hens. An ODE-based mixed modelling approach for B- and T-cell dynamics induced by Varicella-Zoster Virus vaccines in adults shows higher T-cell proliferation with Shingrix than with Varilrix. Vaccine, 2019 May 1;37(19):2537-2553.

G. Elias, B. Ogunjimi and V. Van Tendeloo. Tracking Dye-Independent Approach to Identify and Isolate In Vitro Expanded T Cells. Cytometry A. 2019, 95(10):1096-1107.

G. Elias, A. Souquette, S. Heynderickx, I. De Meester, H. Jansens, P. Beutels, P. Van Damme, E. Smits, P. Thomas, V. Van Tendeloo and B. Ogunjimi. Altered CD4+ T-Cell Immunity in Nurses Occupationally Exposed to Viral Pathogens. Clinical and Experimental Immunology, 2018, 194(2):192-204.

B. Ogunjimi*, S. Y . Zhang*, K. Sorenson*, K. Skipper , M. Carter - Timofte, G. K erner , S. Lucke, T . Prabakaran, Y . Cai, J. Meester , E. Bartholomeus, N. Ajit Bolar , G. V andeweyer , C. Claes, Y . Sillis, L. Lorenzo, R. Fiorenza, S. Boucherit, C. Dielman, Steven Heynderickx, G. Elias, A. Kurotova, A. Vander Auwera, L. Verstraete, L. Lagae, H. Verhelst, A. Jansen, J. Ramet, A. Suls, E. Smits, B. Ceulemans, L. Van Laer , G. Plat Wilson, J. Kreth, C. Picard, H. V on Bernuth, J. Fluss, S. Chabrier , L. Abel, G. Mortier, S. Fribourg, J. Giehm Mikkelsen, J.L. Casanova, S.R Paludan and T.H. Mogensen. *equal contribution. Inborn errors in RNA polymerase III underlie severe varicella zoster virus infections. Journal of Clinical Investigation, 2017, Aug 7.

 

On bioRxiv

P. Moris, . J. De Pauw, A. Postovskaya, B. Ogunjimi, K. Laukens and P. Meysman.  Treating biomolecular interaction as an image classification problem – a case study on T-cell receptor-epitope recognition prediction

 

Editorials or commentaries on publications

About Ogunjimi et al, Journal of Clinical Investigation, 2017: J. Miner. Deterring zoster. Science Translational Medicine, 2017, 30 Aug.