Adrem Data Lab

Publications

AI proteomics : from protein identification to virtual cells

Source
Nature methods - ISSN 1548-7091- (2026) p.
Author(s)
    Yingying Sun, Jun A, Zhiwei Liu, Rui Sun, Liujia Qian, Samuel H. Payne, Wout Bittremieux, Markus Ralser, Chen Li, Yi Chen, Zhen Dong, Yasset Perez-Riverol, Asif Khan, Chris Sander, Ruedi Aebersold, Juan Antonio Vizcaíno, Jonathan R. Krieger, Jianhua Yao, Wen Han, Linfeng Zhang, Yunping Zhu, Yue Xuan, Benjamin Boyang Sun, Liang Qiao, Henning Hermjakob, Haixu Tang, Huanhuan Gao, Yamin Deng, Qing Zhong, Cheng Chang, Nuno Bandeira, Ming Li, Weinan E, Siqi Sun, Yuedong Yang, Gilbert S. Omenn, Yue Zhang, Ping Xu, Yan Fu, Xiaowen Liu, Christopher M. Overall, Yu Wang, Eric W. Deutsch, Luonan Chen, Jürgen Cox, Vadim Demichev, Fuchu He, Jiaxing Huang, Huilin Jin, Tiannan Guo

"Patriarchy hurts men too." Does your model agree? A discussion on fairness assumptions

Source
2024 European Conference on Machine Learning and Principles and Practice, of Knowledge Discovery in Databases-ECML PKDD-Annual, SEP 09-13, 2024, Vilnius, Lithuania-2558 (2026) p. 3-18
Author(s)

Hierarchy of MS-based evidence

Source
Journal of proteome research - ISSN 1535-3893-25:8 (2026) p. 4347-4350
Author(s)
    Charlotte Adams, Michael G. Leeming, David Teschner, Andreas Hildebrandt, Sebastian A. Leidel, Magnus Palmblad

Bridging complexity and accessibility in metabolomics with MetaboApps

Source
Nature methods - ISSN 1548-7091-23:8 (2026) p. 1475-1477
Author(s)
    Helena Mannochio-Russo, Wilhan D. Goncalves Nunes, Haoqi Nina Zhao, Kine Eide Kvitne, Shipei Xing, Harsha Gouda, Julius Agongo, Ipsita Mohanty, Vincent Charron-Lamoureux, Prajit Rajkumar, Abzer K. Pakkir Shah, Axel Walter, Rithi Krishnaraj, Yasin El Abiead, Patrick C. Ferreira, Simone Zuffa, Abubaker Patan, Andres Mauricio Caraballo-Rodriguez, Wout Bittremieux, Daniel Petras, Mingxun Wang, Pieter C. Dorrestein