Kris Laukens

Professor

Publications in the spotlight

MILES : a Java tool to extract node-specific enriched subgraphs in biomolecular networks
Moris Pieter   Bui Thi Danh   Laukens Kris   Meysman Pieter  
Bioinformatics - ISSN 1367-4803-36:6 (2020) p. 1978-1980
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MESSAR : automated recommendation of metabolite substructures from tandem mass spectra
Liu Youzhong   Mrzic Aida   Meysman Pieter   de Vijlder Thomas   Romijn Edwin P.   Valkenborg Dirk   Bittremieux Wout   Laukens Kris  
PLoS ONE - ISSN 1932-6203-15:1 (2020) p. 1-17
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On the viability of unsupervised T-cell receptor sequence clustering for epitope preference
Meysman Pieter   De Neuter Nicolas   Gielis Sofie   Bui Thi Danh   Ogunjimi Benson   Laukens Kris  
Bioinformatics - ISSN 1367-4803-35:9 (2019) p. 1461-1468
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Whole genome sequencing of Mycobacterium tuberculosis : current standards and open issues
Meehan Conor J.   Goig Galo A.   Kohl Thomas A.   Verboven Lennert   Dippenaar Anzaan   Ezewudo Matthew   Farhat Maha R.   Guthrie Jennifer L.   Laukens Kris   Miotto Paolo   Ofori-Anyinam Boatema   Dreyer Viola   Supply Philip   Suresh Anita   Utpatel Christian   van Soolingen Dick   Zhou Yang   Ashton Philip M.   Brites Daniela   Cabibbe Andrea M.   de Jong Bouke C.   de Vos Margaretha   Menardo Fabrizio   Gagneux Sebastien   Goa Qian   Heupink Tim   Liu Qingyun   Loiseau Chloé   Rigouts Leen   Rodwell Timothy C.   Tagliani Elisa   Walker Timothy M.   Warren Robin M.   Zhao Yanlin   Zignol Matteo   Schito Marco   Gardy Jennifer   Cirillo Daniela M.   Niemann Stefan   Comas Inaki   Van Rie Annelies  
Nature reviews: microbiology - ISSN 1740-1526-17:9 (2019) p. 533-545
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Extremely fast and accurate open modification spectral library searching of high-resolution mass spectra using feature hashing and graphics processing units
Bittremieux Wout   Laukens Kris   Stafford Noble William  
Journal of Proteome Research - ISSN 1535-3907-18:10 (2019) p. 3792-3799
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Mass spectrometry-based structure elucidation of small molecule impurities and degradation products in pharmaceutical development
Liu Youzhong   Romijn Edwin P.   Verniest Guido   Laukens Kris   De Vijlder Thomas  
Trends in analytical chemistry - ISSN 0165-9936-121 (2019)
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Detection of enriched T cell epitope specificity in full T cell receptor sequence repertoires
Gielis Sofie   Moris Pieter   Bittremieux Wout   De Neuter Nicolas   Ogunjimi Benson   Laukens Kris   Meysman Pieter  
Frontiers in immunology - ISSN 1664-3224-10 (2019)
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On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition
De Neuter Nicolas   Bittremieux Wout   Beirnaert Charlie   Cuypers Bart   Mrzic Aida   Moris Pieter   Suls Arvid   Van Tendeloo Vigor   Ogunjimi Benson   Laukens Kris   Meysman Pieter  
Immunogenetics - ISSN 0093-7711-70:3 (2018) p. 159-168
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A tutorial in small molecule identification via electrospray ionization-mass spectrometry : the practical art of structural elucidation
de Vijlder Thomas   Valkenborg Dirk   Lemière Filip   Laukens Kris   Romijn Edwin P.   Cuyckens Filip  
Mass spectrometry reviews - ISSN 0277-7037-37:5 (2018) p. 607-629
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speaq 2.0 : a complete workflow for high-throughput 1D NMR spectra processing and quantification
Beirnaert Charlie   Meysman Pieter   Vu Trung N.   Hermans Nina   Apers Sandra   Pieters Luc   Covaci Adrian   Laukens Kris  
PLoS computational biology - ISSN 1553-734X-14:3 (2018)
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Grasping frequent subgraph mining for bioinformatics applications
Mrzic Aida   Meysman Pieter   Bittremieux Wout   Moris Pieter   Cule Boris   Goethals Bart   Laukens Kris  
BioData Mining - ISSN 1756-0381-11 (2018)
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Fast open modification spectral library searching through approximate nearest neighbor indexing
Bittremieux Wout   Meysman Pieter   Noble William Stafford   Laukens Kris  
Journal of proteome research - ISSN 1535-3893-17:10 (2018) p. 3463-3474
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Protein complex analysis : from raw protein lists to protein interaction networks
Meysman Pieter   Titeca Kevin   Eyckerman Sven   Tavernier Jan   Goethals Bart   Martens Lennart   Valkenborg Dirk   Laukens Kris  
Mass spectrometry reviews - ISSN 0277-7037-36:5 (2017) p. 600-614
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Unsupervised quality assessment of mass spectrometry proteomics experiments by multivariate quality control metrics
Bittremieux Wout   Meysman Pieter   Martens Lennart   Valkenborg Dirk   Laukens Kris  
Journal of proteome research - ISSN 1535-3893-15:4 (2016) p. 1300-1307
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Mining the enriched subgraphs for specific vertices in a biological graph
Meysman Pieter   Saeys Ivan   Sabaghian Ehsan   Bittremieux Wout   Van de Peer Yves   Goethals Bart   Laukens Kris  
IEEE/ACM transactions on computational biology and bioinformatics - ISSN 1545-5963- (2016) p. 1-12
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A primer to frequent itemset mining for bioinformatics
Naulaerts Stefan   Meysman Pieter   Bittremieux Wout   Vu Trung N.   Vanden Berghe Wim   Goethals Bart   Laukens Kris  
Briefings in bioinformatics - ISSN 1467-5463-16:2 (2015) p. 216-231
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Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns
Meysman Pieter   Zhou Cheng   Cule Boris   Goethals Bart   Laukens Kris  
BioData Mining - ISSN 1756-0381-8 (2015)
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iMonDB : mass spectrometry quality control through instrument monitoring
Bittremieux Wout   Willems Hanny   Kelchtermans Pieter   Martens Lennart   Laukens Kris   Valkenborg Dirk  
Journal of proteome research - ISSN 1535-3893-14:5 (2015) p. 2360-2366
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Machine learning applications in proteomics research : how the past can boost the future
Kelchtermans Pieter   Bittremieux Wout   De Grave Kurt   Degroeve Sven   Ramon Jan   Laukens Kris   Valkenborg Dirk   Barsnes Harald   Martens Lennart  
Proteomics - ISSN 1615-9853-14:4-5 (2014) p. 353-366
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jqcML : an open-source Java API for mass spectrometry quality control data in the qcML format
Bittremieux Wout   Kelchtermans Pieter   Valkenborg Dirk   Martens Lennart   Laukens Kris  
Journal of proteome research - ISSN 1535-3893-13:7 (2014) p. 3484-3487
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Mining spatially cohesive itemsets in protein molecular structures
Zhou Cheng   Meysman Pieter   Cule Boris   Laukens Kris   Goethals Bart  
BioKDD13: 12th International Workshop on Data Mining in Bioinformatics proceedings, 2013-p. 1-9
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Use of structural DNA properties for the prediction of transcription-factor binding sites in **Escherichia coli**
Meysman Pieter   Dang Thanh Hai   Laukens Kris   de Smet Riet   Wu Yan   Marchal Kathleen   Engelen Kristof  
Nucleic acids research - ISSN 0305-1048-39:2 (2011) p. e6,1-e6,11
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Targeted interactomics reveals a complex core cell cycle machinery in **Arabidopsis thaliana**
van Leene Jelle   Hollunder Jens   Eeckhout Dominique   Persiau Geert   van de Slijke Eveline   Stals Hilde   van Isterdael Gert   Verkest Aurine   Neirynck Sandy   Buffel Yelle   de Bodt Stefanie   Maere Steven   Laukens Kris   Pharazyn Anne   Ferreira Paulo C.G.   Eloy Nubia   Renne Charlotte   Meyer Christian   Faure Jean-Denis   Steinbrenner Jens   Benyon Jim   Larkin John C.   van de Peer Yves   Hilson Pierre   Kuiper Martin   de Veylder Lieven   Van Onckelen Henri   Inzé Dirk   Witters Erwin   de Jaeger Geert  
Molecular systems biology - ISSN 1744-4292-6 (2010) p. 397,1-397,12
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Prediction of kinase-specific phosphorylation sites using conditional random fields
Dang Thanh Hai   van Leemput Koen   Verschoren Alain   Laukens Kris  
Bioinformatics - ISSN 1367-4803-24:24 (2008) p. 2857-2864
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Full bibliography of this author