Tim Heupink senior onderzoeker

Publicaties Tim Heupink

Evaluation of DNA extraction methods from clinical Mycobacterium tuberculosis primary liquid culture for whole-genome sequencing

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BMC genomics - ISSN 1471-2164-27:1 (2026) p.
Auteur(s)
    Emilyn Costa Conceicao, Mishka Haffejee, Felicia Wells, Brendon Mann, Tim Heupink, Astrid Paulse, Jennifer Williams, Anzaan Dippenaar, Yonas Ghebrekristos, Megan Burger, Vincent Rennie, Miguel de Diego Fuertes, Ilham Al-Talib, Nabila Ismail, Melanie Grobbelaar, Elizabeth Maria Streicher, Tulio de Oliveira, Gian van der Spuy, Annelies Van Rie, Robin Warren

Convolutional neural networks quantify antibiotic resistance in Mycobacterium tuberculosis with diagnostic grade accuracy and predict treatment response

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Nature communications - ISSN 2041-1723-17:1 (2026) p.
Auteur(s)
    Sanjana G. Kulkarni, Anna G. Green, Brendon C. Mann, Samantha Malatesta, Suchitra Kulkarni-Goodwin, Nina Cesare, Shandukani Mulaudzi, Noorjahn Rawoot, Keertan Dheda, Shaheed Vally Omar, Hafid Soualhine, Nazir Ismail, Barun Mathema, Neel Gandhi, Helen McIlleron, Satoshi Mitarai, Kyungjong Kim, Helen Cox, Stuart Meier, Elizabeth Streicher, Sacha Laurent, Timothy Rodwell, Carl-Michael Nathanson, Barry Kreiswirth, Elise DeVos, Daniela Cirillo, Vincent E. Escuyer, Elena Martinez, Vitali Sintchenko, Anzaan Dippenaar, Tim Heupink, Annelies Van Rie, James C.M. Brust, Robin M. Warren, Karen R. Jacobson, Maha R. Farhat

Whole genome sequencing precision medicine strategyto shorten treatment for rifampicin-resistant tuberculosis (SMARTT) : a pragmatic, randomised, single-blind phase 4 trial

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The lancet respiratory medicine - ISSN 2213-2600-14:6 (2026) p. 521-532
Auteur(s)

Targeted and whole-genome sequencing for drug resistance and genetic relatedness inference of rifampicin-resistant Mycobacterium tuberculosis : an in-depth comparison

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ERJ Open Research - ISSN 2312-0541-12:1 (2026) p. 1-13
Auteur(s)

Mycobacterium tuberculosis cultured in MGIT media for wholegenome sequencing application : a systematic literature review and meta-analysis

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Microbial Genomics - ISSN 2057-5858-11:11 (2025) p. 1-12
Auteur(s)