Kris Laukens

Hoofddocent

Publicaties in de kijker

On the viability of unsupervised T-cell receptor sequence clustering for epitope preference
Meysman Pieter   De Neuter Nicolas   Gielis Sofie   Bui Thi Danh   Ogunjimi Benson   Laukens Kris  
Bioinformatics - ISSN 1367-4803-35:9 (2019) p. 1461-1468
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Using expert driven machine learning to enhance dynamic metabolomics data analysis
Beirnaert Charlie   Peeters Laura   Meysman Pieter   Bittremieux Wout   Foubert Kenn   Custers Deborah   Van der Auwera Anastasia   Cuykx Matthias   Pieters Luc   Covaci Adrian   Laukens Kris  
Metabolites - ISSN 2218-1989-9:3 (2019)
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On the feasibility of mining CD8+ T cell receptor patterns underlying immunogenic peptide recognition
De Neuter Nicolas   Bittremieux Wout   Beirnaert Charlie   Cuypers Bart   Mrzic Aida   Moris Pieter   Suls Arvid   Van Tendeloo Vigor   Ogunjimi Benson   Laukens Kris   Meysman Pieter  
Immunogenetics - ISSN 0093-7711-70:3 (2018) p. 159-168
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pBRIT : gene prioritization by correlating functional and phenotypic annotations through integrative data fusion
Kumar Ajay   Van Laer Lut   Alaerts Maaike   Ardeshirdavani Amin   Moreau Yves   Laukens Kris   Loeys Bart   Vandeweyer Geert  
Bioinformatics - ISSN 1367-4803-34:13 (2018) p. 2254-2262
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speaq 2.0 : a complete workflow for high-throughput 1D NMR spectra processing and quantification
Beirnaert Charlie   Meysman Pieter   Vu Trung N.   Hermans Nina   Apers Sandra   Pieters Luc   Covaci Adrian   Laukens Kris  
PLoS computational biology - ISSN 1553-734X-14:3 (2018)
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Grasping frequent subgraph mining for bioinformatics applications
Mrzic Aida   Meysman Pieter   Bittremieux Wout   Moris Pieter   Cule Boris   Goethals Bart   Laukens Kris  
BioData Mining - ISSN 1756-0381-11 (2018)
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Fast open modification spectral library searching through approximate nearest neighbor indexing
Bittremieux Wout   Meysman Pieter   Noble William Stafford   Laukens Kris  
Journal of proteome research - ISSN 1535-3893-17:10 (2018) p. 3463-3474
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Protein complex analysis : from raw protein lists to protein interaction networks
Meysman Pieter   Titeca Kevin   Eyckerman Sven   Tavernier Jan   Goethals Bart   Martens Lennart   Valkenborg Dirk   Laukens Kris  
Mass spectrometry reviews - ISSN 0277-7037-36:5 (2017) p. 600-614
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Unsupervised quality assessment of mass spectrometry proteomics experiments by multivariate quality control metrics
Bittremieux Wout   Meysman Pieter   Martens Lennart   Valkenborg Dirk   Laukens Kris  
Journal of proteome research - ISSN 1535-3893-15:4 (2016) p. 1300-1307
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Mining the enriched subgraphs for specific vertices in a biological graph
Meysman Pieter   Saeys Ivan   Sabaghian Ehsan   Bittremieux Wout   Van de Peer Yves   Goethals Bart   Laukens Kris  
IEEE/ACM transactions on computational biology and bioinformatics - ISSN 1545-5963- (2016) p. 1-12
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A primer to frequent itemset mining for bioinformatics
Naulaerts Stefan   Meysman Pieter   Bittremieux Wout   Vu Trung N.   Vanden Berghe Wim   Goethals Bart   Laukens Kris  
Briefings in bioinformatics - ISSN 1467-5463-16:2 (2015) p. 216-231
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Mining the entire Protein DataBank for frequent spatially cohesive amino acid patterns
Meysman Pieter   Zhou Cheng   Cule Boris   Goethals Bart   Laukens Kris  
BioData Mining - ISSN 1756-0381-8 (2015)
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iMonDB : mass spectrometry quality control through instrument monitoring
Bittremieux Wout   Willems Hanny   Kelchtermans Pieter   Martens Lennart   Laukens Kris   Valkenborg Dirk  
Journal of proteome research - ISSN 1535-3893-14:5 (2015) p. 2360-2366
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Discovery of significantly enriched subgraphs associated with selected vertices in a single graph
Meysman Pieter   Saeys Yvan   Sabaghian Ehsan   Bittremieux Wout   Van de Peer Yves   Goethals Bart   Laukens Kris  
14th International Workshop on Data Mining in Bioinformatics (BIOKDD'15), August 10, 2015, Sydney, Australia-p. 1-8
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Machine learning applications in proteomics research : how the past can boost the future
Kelchtermans Pieter   Bittremieux Wout   De Grave Kurt   Degroeve Sven   Ramon Jan   Laukens Kris   Valkenborg Dirk   Barsnes Harald   Martens Lennart  
Proteomics - ISSN 1615-9853-14:4-5 (2014) p. 353-366
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jqcML : an open-source Java API for mass spectrometry quality control data in the qcML format
Bittremieux Wout   Kelchtermans Pieter   Valkenborg Dirk   Martens Lennart   Laukens Kris  
Journal of proteome research - ISSN 1535-3893-13:7 (2014) p. 3484-3487
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Mining spatially cohesive itemsets in protein molecular structures
Zhou Cheng   Meysman Pieter   Cule Boris   Laukens Kris   Goethals Bart  
BioKDD13: 12th International Workshop on Data Mining in Bioinformatics proceedings, 2013-p. 1-9
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Use of structural DNA properties for the prediction of transcription-factor binding sites in **Escherichia coli**
Meysman Pieter   Dang Thanh Hai   Laukens Kris   de Smet Riet   Wu Yan   Marchal Kathleen   Engelen Kristof  
Nucleic acids research - ISSN 0305-1048-39:2 (2011) p. e6,1-e6,11
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Targeted interactomics reveals a complex core cell cycle machinery in **Arabidopsis thaliana**
van Leene Jelle   Hollunder Jens   Eeckhout Dominique   Persiau Geert   van de Slijke Eveline   Stals Hilde   van Isterdael Gert   Verkest Aurine   Neirynck Sandy   Buffel Yelle   de Bodt Stefanie   Maere Steven   Laukens Kris   Pharazyn Anne   Ferreira Paulo C.G.   Eloy Nubia   Renne Charlotte   Meyer Christian   Faure Jean-Denis   Steinbrenner Jens   Benyon Jim   Larkin John C.   van de Peer Yves   Hilson Pierre   Kuiper Martin   de Veylder Lieven   Van Onckelen Henri   InzĂ© Dirk   Witters Erwin   de Jaeger Geert  
Molecular systems biology - ISSN 1744-4292-6 (2010) p. 397,1-397,12
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Prediction of kinase-specific phosphorylation sites using conditional random fields
Dang Thanh Hai   van Leemput Koen   Verschoren Alain   Laukens Kris  
Bioinformatics - ISSN 1367-4803-24:24 (2008) p. 2857-2864
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